Bacterial Physiology

2024

Fiore-Donno, A. M., Freudenthal, J., Dahl, M. B., Rixen, C., Urich, T., & Bonkowski, M. (2024). Biotic interactions explain seasonal dynamics of the alpine soil microbiome. ISME Communications, 4(1).
DOI: 10.1038/s43705-023-00239-8

Liebmann, P., Bárta, J., Vogel, C., Urich, T., Kholodov, A., Varsadiya, M., ... & Guggenberger, G. (2024). Permafrost degradation and its consequences for carbon storage in soils of Interior Alaska. Biogeochemistry167(3), 199-223.
DOI: 10.1007/s10533-024-01132-4

Piecha, M., Kreyling, J., Couwenberg, J., Pester, M., Guenther, A., Henningsen, L., ... & Wang, H. (2024). Plant roots but not hydrology control microbiome composition and methane flux in temperate fen mesocosms. Science of the Total Environment, 173480.
DOI: 10.1016/j.scitotenv.2024.173480

Söllinger, A., Ahlers, L. S., Dahl, M. B., Sigurðsson, P., Le Noir de Carlan, C., Bhattarai, B., ... & Tveit, A. T. (2024). Microorganisms in subarctic soils are depleted of ribosomes under short-, medium-, and long-term warming. The ISME Journal, 18(1).
DOI: 10.1038/s41396-023-01441-8

 

2023

Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, L., ... & Weigel, R. (2023). Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea, and fungi)—With potential implications for ecosystem functioning. Environmental Microbiology, 25(6), 1118-1135.
DOI: 10.1111/1462-2920.16264

Dahl, M. B., Söllinger, A., Sigurðsson, P., Janssens, I., Peñuelas, J., Sigurdsson, B. D., ... & Urich, T. (2023). Long-term warming-induced trophic downgrading in the soil microbial food web. Soil Biology and Biochemistry, 181, 109044.
DOI: 10.1016/j.soilbio.2023.109044

Groß, V., Reinhard, A., Petters, S., Pichler, M., & Urich, T. (2023). Adding complexity to soil food webs: Myxobacteria have broad predation spectra with bacteria, yeasts, and filamentous fungi in vitro. European Journal of Soil Biology, 117, 103508.
DOI: 10.1016/j.ejsobi.2023.103508

Meene, A., Gierse, L., Schwaiger, T., Karte, C., Schröder, C., Höper, D., ... & Urich, T. (2023). Archaeome structure and function of the intestinal tract in healthy and H1N1 infected swine. Frontiers in Microbiology, 14, 1250140.
DOI: 10.3389/fmicb.2023.1250140

Wang, H., Jurasinski, G., Täumer, J., Kuß, A. W., Groß, V., Köhn, D., ... & Urich, T. (2023). Linking transcriptional dynamics of peat microbiomes to methane fluxes during a summer drought in two rewetted fens. Environmental Science & Technology, 57(12), 5089-5101.
DOI: 10.1021/acs.est.2c07461

Weil, M., Wang, H., Zak, D., & Urich, T. (2023). Spatial and temporal niche separation of methanomassiliicoccales phylotypes in temperate fens. FEMS Microbiology Ecology, 99(6), fiad049.
DOI: 10.1093/femsec/fiad049

2022

Bhar, A., Gierse, L. C., Meene, A., Wang, H., Karte, C., Schwaiger, T., ... & Kaderali, L. (2022). Application of a maximal-clique based community detection algorithm to gut microbiome data reveals driver microbes during influenza A virus infection. Frontiers in Microbiology, 13, 979320.
DOI: 10.3389/fmicb.2022.979320

Söllinger, A., Séneca, J., Dahl, M. B., Motleleng, L. L., Prommer, J., Verbruggen, E., ... & Tveit, A. T. (2022). Down-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warming. Science Advances, 8(12), eabm3230.
DOI: 10.1126/sciadv.abm3230

Täumer, J., Marhan, S., Groß, V., Jensen, C., Kuss, A. W., Kolb, S., & Urich, T. (2022). Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes. The ISME Journal, 16(7), 1788-1797.
DOI: 10.1038/s41396-022-01220-7

Wang, H., Meister, M., Jensen, C., Kuss, A. W., & Urich, T. (2022). The impact of summer drought on peat soil microbiome structure and function-A multi-proxy comparison. ISME Communications, 2(1), 78.
DOI: 10.1038/s43705-022-00150-7

2021

Petters, S., Groß, V., Söllinger, A., Pichler, M., Reinhard, A., Bengtsson, M. M., & Urich, T. (2021). The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?. The ISME Journal, 15(9), 2665-2675.
DOI: 10.1038/s41396-021-00957-5

Weil, M., Hoff, K. J., Meißner, W., Schäfer, F., Söllinger, A., Wang, H., ... & Urich, T. (2021). Full genome sequence of a Methanomassiliicoccales representative enriched from peat soil. Microbiology Resource Announcements10(48), e00443-21. 
DOI: doi.org/10.1128/MRA.00443-21

Gierse, L. C., Meene, A., Schultz, D., Schwaiger, T., Schröder, C., Mücke, P., ... & Riedel, K. (2021). Influenza A H1N1 induced disturbance of the respiratory and fecal microbiome of german landrace pigs–a multi-omics characterization. Microbiology Spectrum9(2), e00182-21.
DOI: doi.org/10.1128/Spectrum.00182-21

Wang, H., Weil, M., Dumack, K., Zak, D., Münch, D., Günther, A., ... & Urich, T. (2021). Eukaryotic rather than prokaryotic microbiomes change over seasons in rewetted fen peatlands. FEMS Microbiology Ecology97(9), fiab121.
DOI: doi.org/10.1093/femsec/fiab121

Wang, H., Bagnoud, A., Ponce-Toledo, R. I., Kerou, M., Weil, M., Schleper, C., & Urich, T. (2021). Linking 16S rRNA gene classification to amoA gene taxonomy reveals environmental distribution of ammonia-oxidizing archaeal clades in peatland soils. Msystems6(4), 10-1128.
DOI: doi.org/10.1128/mSystems.00546-21

Täumer, J., Kolb, S., Boeddinghaus, R. S., Wang, H., Schöning, I., Schrumpf, M., ... & Marhan, S. (2021). Divergent drivers of the microbial methane sink in temperate forest and grassland soils. Global Change Biology27(4), 929-940.
DOI: 10.1111/gcb.15430

 

2020

Gierse, L. C., Meene, A., Schultz, D., Schwaiger, T., Karte, C., Schröder, C., ... & Riedel, K. (2020). A multi-omics protocol for swine feces to elucidate longitudinal dynamics in microbiome structure and function. Microorganisms, 8(12), 1887.
DOI: doi.org/10.3390/microorganisms8121887

Jurasinski, G., Ahmad, S., Anadon-Rosell, A., Berendt, J., Beyer, F., Bill, R., ... & Wrage-Mönnig, N. (2020). From understanding to sustainable use of peatlands: The WETSCAPES approach. Soil Systems4(1), 14.
DOI:10.3390/soilsystems4010014

Weil, M., Wang, H., Bengtsson, M., Köhn, D., Günther, A., Jurasinski, G., ... & Urich, T. (2020). Long-term rewetting of three formerly drained peatlands drives congruent compositional changes in pro-and eukaryotic soil microbiomes through environmental filtering. Microorganisms8(4), 550.
DOI: 10.3390/microorganisms8040550