Prof. Dr. Katharina Riedel

Rector of the University of Greifswald

Microbial Physiology and Molecular Biology

Felix-Hausdorff-Straße 8 - 1. floor right - room-nr.: 1.49
17489 Greifswald

phone: +49 (0)3834 420 5900
fax:      +49 (0)3834 420 5909
email:   riedela(at)uni-greifswald(dot)de

opening hours: Mo 09:00-11:00 Uhr and by appointment
(Only valid for the corresponding semester)

Curriculum Vitae
since 04/2021 Rector of the University of Greifswald
04/2017 – 03/2021 Pro-rector (responsible for research and international affairs, equal opportunities)
2016 – 2017 Vice-dean of the Faculty of Natural Science (MNF)
07/2013 – 05/2020 Managing Director of the “Institute of Microbiology” at the University of Greifswald
2011 - 2013 Chairholder for Microbiology and Vicedirector of the “Institute of Microbiology” at the University of Greifswald, Germany
since 02/2011 Leader of the “Microbial Proteomics” Group at the Helmholtz-Centre for Infection Research, Braunschweig
07/2010 – 09/2011 Professor for Microbial Proteomics at Institute of Microbiology at the TU Braunschweig, Germany
2007 – 2010 Lecturer and group leader „Microbial Proteomics“ at the Department of Microbiology, Institute of Plant Biology, University of Zurich
2006 Habilitation. Topic: Global gene regulation in Gram-negative bacteria: proteomics to investigate quorum sensing-regulated und surface-induced phenotypes
2004 – 2006 Group leader “Bacterial Proteomics” at the Department of Microbiology, Institute of Plant Biology, University of Zurich, Switzerland
2001 – 2003 Group leader „Bacterial Proteomics“ at the Institute of Microbiology, TU Munich
1999 – 2000 Postdoctoral fellowship of the German Science Foundation with Soeren Molin at DTU Lyngby, Denmark
1994 – 1998 Graduation and PhD with Professor Dr. K.-H. Schleifer at the Institute of Microbiology, TU Munich
1988 – 1994 Studies of Biology, TU Munich, Germany
1968 Year of birth
Research Interests
  • to unravel the molecular basis of bacterial infections caused by opportunistic Gram-positive and Gram-negative pathogens by pathoproteomics
  • to investigate molecular interactions in mixed-species biofilms
  • to analyze structure and function of microbial communities in terrestric and aquatic environments by metaproteomics
  • to develop bioinformatic tools to analyze, integrate and vizualize complex omics-datasets

 

Awards

2013: North German Research Prize

Selected Funded Projects
Project Title Funding Source Duration
Impact of quorum-sensing regulated phenotypic traits on the pathogenicity of Burkholderia pseudomallei DFG Graduate School 2014-2017
Impact of membrane potential o Staphylococcus aureus biofilms DFG TRR 34 2014-2017
Proteomics of Staphylococcus aureus DFG TRR 34 2014-2017
Stability and change in the lichen microbiome DFG 2013-2015
From the protein inventory to a comprehensive understanding of pathophysiology of Clostridium difficile Lower Saxony – VW Vorab 2014-2015
UroGenoMics BMBF 2010-2013
Center for Antimicrobial Research CAR DSF 2009-2012
MICDIF – Linking microbial diversity and ecosystem functions across scales and interfaces FWF 2007-2010
Molecular characterization of a cell-cell communication system operating in Enterobacter sakazakii and analysis of regulated functions by comparative proteomics SNF 2006-2009
Identification of quorum sensing-regulated genes in Pseudomonas aeruginosa and Pseudomonas putida DFG 2001-2004
Publication list
2022
  • Heinz V, Jäckel W, Kaltwasser S, et al. The Vibrio vulnificus stressosome is an oxygen-sensor involved in regulating iron metabolism. Commun Biol. 2022;5(1):622. PMID: 35761021
     
  • Brauer M, Herrmann J, Zühlke D, Müller R, Riedel K, Sievers S. Myxopyronin B inhibits growth of a Fidaxomicin-resistant Clostridioides difficile isolate and interferes with toxin synthesis. Gut Pathog. 2022;14(1):4. PMID: 34991700
     
  • Strittmatter CS, Eggers J, Biesgen V, Albrecht D,Riedel K, et al. Insights into the degradation of medium-chain-length dicarboxylic acids in cupriavidus necator h16 reveal β-oxidation differences between dicarboxylic acids and fatty acids. Appl Environ Microbiol. 2022;88(2):e0187321. PMID: 34731045
2021

  • Schneider D, Zühlke D, Poehlein A, Riedel K, Daniel R. Metagenome-assembled genome sequences from different wastewater treatment stages in germany. Microbiol Resour Announc. 2021;10(27):e0050421. PMID: 34236226
     

  • Brauer M, Lassek C, Hinze C, et al. What’s a biofilm? -how the choice of the biofilm model impacts the protein inventory of clostridioides difficile. Front Microbiol. 2021;12:682111. PMID: 34177868
     

  • Mikolasch A, Berzhanova R, Omirbekova A, et al. Moniliella spathulata, an oil-degrading yeast, which promotes growth of barley in oil-polluted soil. Appl Microbiol Biotechnol. 2021;105(1):401-415. PMID: 33219393
2020
  • Quintieri L, Fanelli F, Zühlke D, Caputo L, Logrieco AF, Albrecht D and Riedel K. Biofilm and Pathogenesis-Related Proteins in the Foodborne ITEM 17298 With Distinctive Phenotypes During Cold Storage. Front Microbiol. 2020;11:991. PMID:32670211
     
  • Schneider D, Zühlke D, Petscheleit T, Poehlein A, Riedel K, Daniel R. Complete Genome Sequence of Escherichia coli GW-AmxH19, Isolated from Hospital Wastewater in Greifswald, Germany. Microbiol Resour Announc. 2020;9(21). PMID:32439663
     
  • Schultz D, Zühlke D, Bernhardt J, et al. An optimized metaproteomics protocol for a holistic taxonomic and functional characterization of microbial communities from marine particles. Environ Microbiol Rep. 2020 Apr 12. 12842. PMID:32281239
     
  • Godard T, Zühlke D, Richter G, et al. Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium. Front Bioeng Biotechnol. 2020;8:47. PMID:32161752
     
  • Shome D, von Woedtke T, Riedel K, Masur K. The HIPPO Transducer YAP and Its Targets CTGF and Cyr61 Drive a Paracrine Signalling in Cold Atmospheric Plasma-Mediated Wound Healing. Oxid Med Cell Longev. 2020;2020:4910280. PMID:32104533
     
  • Karyolaimos A, Dolata KM, Antelo-varela M, et al.Escherichia coli Can Adapt Its Protein Translocation Machinery for Enhanced Periplasmic Recombinant Protein Production. Front Bioeng Biotechnol. 2019;7:465. PMID:32064253
     
  • Costa OYA, Zerillo MM, Zühlke D, Kielak AM, Pijl A, Riedel K et al. Responses of sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. Microorganisms. 2020;8(2) PMID:32059463
     
  • Petersen I, Schlüter R, Hoff K, Liebscher V, Bange G, Riedel A , et al. Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23). Sci Rep. 2020;10(1):125. PMID:3192485
2019
  • Chinchilla D, Bruisson S, Meyer S, et al. A sulfur-containing volatile emitted by potato-associated bacteria confers protection against late blight through direct anti-oomycete activity. Sci Rep. 2019;9(1):18778. PMID:31889050
     
  • Hägglund S, Laloy E, Näslund K, et al. Model of persistent foot-and-mouth disease virus infection in multilayered cells derived from bovine dorsal soft palate. Transbound Emerg Dis. 2019; PMID: 31419374
     
  • Karyolaimos A, Ampah-korsah H, Hillenaar T, et al. Enhancing Recombinant Protein Yields in the Periplasm by Combining Signal Peptide and Production Rate Screening. Front Microbiol. 2019;10:1511. PMID:31396164
     
  • Handorf O, Schnabel U, Bösel A, et al. Antimicrobial effects of microwave-induced plasma torch (MiniMIP) treatment on Candida albicans biofilms. Microb Biotechnol. 2019; Jul 1. PMID:31264377
     
  • Cirrincione S, Neumann B, Zühlke D, Riedel K, Pessione E. Detailed Soluble Proteome Analyses of a Dairy-Isolated : A Possible Approach to Assess Food Safety and Potential Probiotic Value. Front Nutr. 2019;6:71. PMID:31157229
     
  • Liu D, Keiblinger KM, Leitner S, et al. Response of Microbial Communities and Their Metabolic Functions to Drying⁻Rewetting Stress in a Temperate Forest Soil. Microorganisms. 2019;7(5), 129. PIMD: 31086038
     
  • Quintieri L, Zühlke D, Fanelli F, et al. Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin. Food Microbiol. 2019;82:177-193. PIMD:31027772
     
  • Graf AC, Leonard A, Schäuble M, et al. Virulence factors produced by biofilms have a moonlighting function contributing to biofilm integrity. Mol Cell Proteomics. 2019. PMID:30850421
     
  • Sievers S, Metzendorf NG, Dittmann S, et al. Differential View on the Bile Acid Stress Response of . Front Microbiol. 2019;10:258.PMID:30833939
     
  • Kohse S, Wulf K, Pauker V, et al. Session 2: Biofilms/Implant associated infections. Biomed Tech (Berl). 2019;64(s1):19-24.PMID:30753140
     
  • Heine V, Meinert-berning C, Lück J, et al. The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis. PLoS ONE. 2019;14(2):e0211876.PMID:30742653
     
  • Guerrero montero I, Dolata KM, Schlüter R, et al. Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein. Microb Cell Fact. 2019;18(1):19.PMID:30696436
     
  • Franke K, Karl I, Centeno TP, et al. Effects of adult temperature on gene expression in a butterfly: identifying pathways associated with thermal acclimation. BMC Evol Biol. 2019;19(1):32.PMID:30674272
     
  • Pfaff F, Hägglund S, Zoli M, Zühlke D, Riedel K, et al. Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus. Viruses. 2019;11(1). PMID:30642035
     
  • Neumann B, Prior K, Bender JK, Harmsen D, Klare I, Fuchs S, Riedel K,et al. A core genome multilocus sequence typing (cgMLST) scheme for . J Clin Microbiol. 2019; JCM.01686-18.PMID:30651394
2018
  • Berges M, Michel AM, Lassek C, Nuss AM, Beckstette M, Dersch P, Riedel K, Sievers S, Becher D, Otto A, Maass S, Rohde M, Eckweiler D, Borrero-de Acuna JM, Jahn M, Neumann-Schaal M, Jahn D. Iron regulation in Clostridioides difficile. Front Microbiol. 2018. 9:3183. PMID:30619231
     
  • Dolata KM, Montero IG, Miller W, et al. Far-reaching cellular consequences of tat deletion in Escherichia coli revealed by comprehensive proteome analyses. Microbiol Res. 2019;218:97-107. PMID:30454663
     
  • Maaß S, Otto A, Albrecht D, Riedel K, Trautwein-schult A, Becher D. Proteomic Signatures of Stressed with Metronidazole, Vancomycin, or Fidaxomicin. Cells. 2018;7(11). PMID: 30445773
     
  • Martins ML, Pinto UM, Riedel K, Vanetti MCD. Quorum Sensing and Spoilage Potential of Psychrotrophic Enterobacteriaceae Isolated from Milk. Biomed Res Int. 2018;2018:2723157. PMID: 30426005
     
  • Keiblinger KM, Riedel K. Sample Preparation for Metaproteome Analyses of Soil and Leaf Litter. Methods Mol Biol. 2018;1841:303-318. PMID:30259495
     
  • Handorf O, Weihe T, Bekeschus S, Graf AC, Schnabel U, Riedel K, et al. Non-thermal plasma jet treatment negatively affects viability and structure of SC5314 biofilms. Appl Environ Microbiol. 2018;pii: AEM.01163-18. PMID:30143511
     
  • Söllinger A, Tveit AT, Poulsen M, Riedel K, et al. Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation. mSystems. 2018 Jul-Aug; 3(4): e00038-18.PMID:30116788
     
  • Meyer F, Netzer J, Meinert C, Voigt B, Riedel K, Steinbüchel A,. A proteomic analysis of ferulic acid metabolism in Amycolatopsis sp. ATCC 39116. Appl Microbiol Biotechnol.2018 May 16. PMID: 29766243
     
  • Sievers S, Dittmann S, Jordt T, Otto A, Hochgräfe F, Riedel K. Comprehensive redox profiling of the thiol proteome of Clostridium difficile. Mol Cell Proteomics.2018 Mar 1. PMID: 29496906
     
  • Graf A, Lewis RJ, Fuchs S, Pagels M, Engelmann S, Riedel K, Pané-Farré J. The hidden lipoproteome of Staphylococcus aureus. Int J Med Microbiol.2018 Feb 1. PMID: 29454809
     
  • Liu Y, Pessi G, Riedel K, Eberl L. Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics. Methods Mol Biol.2018;1673:193-202. PMID: 29130174
2017


  • Maier TV, Lucio M, Lee LH, VerBerkmoes NC, Brislawn CJ, Bernhardt J, Lamendella R, McDermott JE, Bergeron N, Heinzmann SS, Morton JT, González A, Ackermann G, Knight R, Riedel K, Krauss RM, Schmitt-Kopplin P, Jansson JK. Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome. MBio.2017 Oct 17;8(5). PMID: 29042495.

  • Vivod R, Oetermann S, Hiessl S, Gutsche S, Remmers N, Meinert C, Voigt B, Riedel K, Steinbüchel A,. Oligo(cis-1,4-isoprene) aldehyde-oxidizing dehydrogenases of the rubber-degrading bacterium Gordonia polyisoprenivorans VH2. Appl Microbiol Biotechnol.2017 Sep 27. PMID: 28956111.

  • Cernava T, Erlacher A, Aschenbrenner IA, Krug L, Lassek C, Riedel K, Grube M, Berg G. Deciphering functional diversification within the lichen microbiota by meta-omics. Microbiome.2017 Jul 19;5(1):82. PMID: 28724401.

  • Handtke S, Albrecht D, Zühlke D, Otto A, Becher D, Schweder T, Riedel K, Hecker M, Voigt B,. Bacillus pumilus KatX2 confers enhanced hydrogen peroxide resistance to a Bacillus subtilis PkatA::katX2 mutant strain. Microb Cell Fact.2017 Apr 26;16(1):72. PMID: 28446175.

  • Schmidt R, Jager V, Zühlke D, Wolff C, Bernhardt J, Cankar K, Beekwilder J, Ijcken WV, Sleutels F, Boer W, Riedel K, Garbeva P. Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Sci Rep.2017 Apr 13;7(1):862. PMID: 28408760.

  • Meinert C, Brandt U, Heine V, Beyert J, Schmidl S, Wübbeler JH, Voigt B, Riedel K, Steinbüchel A,. Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T. PLoS One.2017 Mar 30;12(3):e0174256. PMID: 28358882.

  • Mazzoli R, Riedel K, Pessione E. Editorial: Bioactive Compounds from Microbes. Front Microbiol.2017 Mar 8;8:392. PMID: 28337192.

  • Eymann C, Lassek C, Wegner U, Bernhardt J, Fritsch OA, Fuchs S, Otto A, Albrecht D, Schiefelbein U, Cernava T, Aschenbrenner I, Berg G, Grube M, Riedel K. Symbiotic interplay of fungi, algae, and bacteria within the lung lichen </i>Lobaria pulmonaria </i> L. Hoffm. as assessed by <i>state-of-the-art</i> metaproteomics. J Proteome Res.2017 Mar 14. PMID: 28290203.

  • Zühlke MK, Schlüter R, Mikolasch A, Zühlke D, Giersberg M, Schindler H, Henning AK, Frenzel H, Hammer E, Lalk M, Bornscheuer UT, Riedel K, Kunze G, Schauer F. Biotransformation and reduction of estrogenicity of bisphenol A by the biphenyl-degrading Cupriavidus basilensis. Appl Microbiol Biotechnol.2017 Jan 3. PMID: 28050635.
2016
  • Khairy H, Meinert C, Wübbeler JH, Poehlein A, Daniel R, Voigt B, Riedel K, Steinbüchel A,. Genome and Proteome Analysis of Rhodococcus erythropolis MI2: Elucidation of the 4,4´-Dithiodibutyric Acid Catabolism. PLoS One.2016 Dec 15;11(12):e0167539. PMID: 27977722.
  • Knight AM, Nobili A, van den Bergh T, Genz M, Joosten HJ, Albrecht D, Riedel K, Pavlidis IV,, Bornscheuer UT. Bioinformatic analysis of fold-type III PLP-dependent enzymes discovers multimeric racemases. Appl Microbiol Biotechnol.2016 Oct 27. PMID: 27787586.

  • Keiblinger KM, Fuchs S, Zechmeister-Boltenstern S, Riedel K. Soil and leaf litter metaproteomics-a brief guideline from sampling to understanding. FEMS Microbiol Ecol.2016 Nov;92(11). PMID: 27549116.

  • Otto A, Maaß S, Lassek C, Becher D, Hecker M, Riedel K, Sievers S. The protein inventory of Clostridium difficile grown in complex and minimal medium. Proteomics Clin Appl.2016 Oct;10(9-10):1068-1072. PMID: 27511832.

  • Zühlke D, Dörries K, Bernhardt J, Maaß S, Muntel J, Liebscher V, Pané-Farré J, Riedel K, Lalk M, Völker U, Engelmann S,,, Becher D, Fuchs S,, Hecker M. Costs of life – Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis. Sci Rep.2016 Jun 27;6:28172. PMID: 27344979.

  • López-Mondéjar R, Zühlke D, Větrovský T, Becher D, Riedel K, Baldrian P. Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199. Biotechnol Biofuels.2016 May 14;9:104. PMID: 27186238.

  • López-Mondéjar R, Zühlke D, Becher D, Riedel K, Baldrian P. Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems. Sci Rep.2016 Apr 29;6:25279. PMID: 27125755.
  • Lassek C, Berger A, Zühlke D, Wittmann C, Riedel K,. Proteome and carbon flux analysis of Pseudomonas aeruginosa clinical isolates from different infection sites. Proteomics.2016 Mar 9. PMID: 26959854.

  • Bonn F, Pané-Farré J, Schlüter R, Schaffer M, Fuchs S, Bernhardt J, Riedel K, Otto A, Völker U, van Dijl JM, Hecker M, Mäder U, Becher D. Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300. Int J Med Microbiol.2016 Feb 17. PMID: 26996810.

  • Vanzo E, Merl-Pham J, Velikova V, Ghirardo A, Lindermayr C, Hauck SM, Bernhardt J, Riedel K, Durner J, Schnitzler JP. Modulation of protein S-nitrosylation by isoprene emission in poplar. Plant Physiol.2016 Feb 5. PMID: 26850277.

  • Dietz S, Lassek C, Mack SL, Ritzmann M, Stadler J, Becher D, Hoelzle K, Riedel K, Hoelzle LE. Updating the proteome of the uncultivable hemotrophic Mycoplasma suis in experimentally infected pigs. Proteomics.2016 Feb;16(4):609-13. PMID: 26678042.

  • Aurass P, Gerlach T, Becher D, Voigt B, Karste S, Bernhardt J, Riedel K, Hecker M, Flieger A. Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors. Mol Cell Proteomics.2016 Jan;15(1):177-200. PMID: 26545400.
2015
  • Heazlewood JL,, Schrimpf SP, Becher D, Riedel K, Tholey A, Bendixen E. Multi-Organism Proteomes (iMOP): Advancing our Understanding of Human Biology. Proteomics.2015 Sep;15(17):2885-94. PMID: 26331910.

  • Martins ML, Pinto UM, Riedel K, Vanetti MC. Milk-deteriorating exoenzymes from Pseudomonas fluorescens 041 isolated from refrigerated raw milk. Braz J Microbiol.2015 Mar 31;46(1):207-17. PMID: 26221110.

  • Moche M, Schlüter R, Bernhardt J, Plate K, Riedel K, Hecker M, Becher D. Time-Resolved Analysis of Cytosolic and Surface-Associated Proteins of Staphylococcus aureus HG001 under Planktonic and Biofilm Conditions. J Proteome Res.2015 Sep 4;14(9):3804-22. PMID: 26152824.

  • Stopnisek N,, Zühlke D, Carlier A, Barberán A, Fierer N,, Becher D, Riedel K, Eberl L, Weisskopf L,. Molecular mechanisms underlying the close association between soil Burkholderia and fungi. ISME J.2016 Jan;10(1):253-64. PMID: 25989372.

  • Mangiapane E, Mazzoli R, Pessione A, Svensson B, Riedel K, Pessione E. Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing. J Proteomics.2015 Sep 8;127(Pt B):332-9. PMID: 25957532.

  • Brack C, Mikolasch A, Schlueter R, Otto A, Becher D, Wegner U, Albrecht D, Riedel K, Schauer F. Antibacterial metabolites and bacteriolytic enzymes produced by Bacillus pumilus during bacteriolysis of Arthrobacter citreus. Mar Biotechnol (NY).2015 Jun;17(3):290-304. PMID: 25678259.

  • Lassek C, Burghartz M, Chaves-Moreno D, Otto A, Hentschker C, Fuchs S, Bernhardt J, Jauregui R, Neubauer R, Becher D, Pieper DH, Jahn M, Jahn D, Riedel K. A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs). Mol Cell Proteomics.2015 Apr;14(4):989-1008. PMID: 25673765.

  • Henning AK, Albrecht D, Riedel K, Mettenleiter TC, Karger A. An alternative method for serum protein depletion/enrichment by precipitation at mildly acidic pH values and low ionic strength. Proteomics.2015 Jun;15(11):1935-40. PMID: 25644273.
2014
  • O’Donoghue P, Prat L, Kucklick M, Schäfer JG, Riedel K, Rinehart J, Söll D, Heinemann IU. Reducing the genetic code induces massive rearrangement of the proteome. Proc Natl Acad Sci U S A.2014 Dec 2;111(48):17206-11. PMID: 25404328.

  • Martins ML, Pinto UM, Riedel K, Vanetti MC, Mantovani HC, de Araújo EF. Lack of AHL-based quorum sensing in Pseudomonas fluorescens isolated from milk. Braz J Microbiol.2014 Oct 9;45(3):1039-46. PMID: 25477941.

  • Grube M, Cernava T, Soh J, Fuchs S, Aschenbrenner I, Lassek C, Wegner U, Becher D, Riedel K, Sensen CW, Berg G. Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics. ISME J.2015 Feb;9(2):412-24. PMID: 25072413.

  • Müller M, Reiß S, Schlüter R, Mäder U, Beyer A, Reiß W, Marles-Wright J, Lewis RJ, Pförtner H, Völker U, Riedel K, Hecker M, Engelmann S, Pané-Farré J. Deletion of membrane-associated Asp23 leads to upregulation of cell wall stress genes in Staphylococcus aureus. Mol Microbiol.2014 Sep;93(6):1259-68. PMID: 25074408.

  • Maaβ S, Wachlin G, Bernhardt J, Eymann C, Fromion V, Riedel K, Becher D, Hecker M. Highly precise quantification of protein molecules per cell during stress and starvation responses in Bacillus subtilis. Mol Cell Proteomics.2014 Sep;13(9):2260-76. PMID: 24878497.
2013 and older
  • Fuchs S, Zühlke D, Pané-Farré J, Kusch H, Wolf C, Reiß S, Binh le TN, Albrecht D, Riedel K, Hecker M, Engelmann S. Aureolib – a proteome signature library: towards an understanding of staphylococcus aureus pathophysiology. PLoS One.2013 Aug 13;8(8):e70669. PMID: 23967085.

  • Mehlan H, Schmidt F, Weiss S, Schüler J, Fuchs S, Riedel K, Bernhardt J. Data visualization in environmental proteomics. Proteomics.2013 Oct;13(18-19):2805-21. PMID: 23913834.

  • Becher D, Bernhardt J, Fuchs S, Riedel K. Metaproteomics to unravel major microbial players in leaf litter and soil environments: challenges and perspectives. Proteomics.2013 Oct;13(18-19):2895-909. PMID: 23894095.

  • Keiblinger KM, Wilhartitz IC, Schneider T, Roschitzki B, Schmid E, Eberl L, Riedel K, Zechmeister-Boltenstern S. Soil metaproteomics – Comparative evaluation of protein extraction protocols. Soil Biol Biochem.2012 Nov;54(15-10):14-24. PMID: 23125465.

  • Inhülsen S, Aguilar C, Schmid N, Suppiger A, Riedel K, Eberl L. Identification of functions linking quorum sensing with biofilm formation in Burkholderia cenocepacia H111. Microbiologyopen.2012 Jun;1(2):225-42. PMID: 22950027.

  • Schneider T, Keiblinger KM, Schmid E, Sterflinger-Gleixner K, Ellersdorfer G, Roschitzki B, Richter A, Eberl L, Zechmeister-Boltenstern S, Riedel K. Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. ISME J.2012 Sep;6(9):1749-62. PMID: 22402400.

  • Moretti M, Minerdi D, Gehrig P, Garibaldi A, Gullino ML, Riedel K. A bacterial-fungal metaproteomic analysis enlightens an intriguing multicomponent interaction in the rhizosphere of Lactuca sativa. J Proteome Res.2012 Apr 6;11(4):2061-77. PMID: 22360353.

  • Hall EK, Besemer K, Kohl L, Preiler C, Riedel K, Schneider T, Wanek W, Battin TJ. Effects of resource chemistry on the composition and function of stream hyporheic biofilms. Front Microbiol.2012 Feb 14;3:35. PMID: 22347877.

  • Felder KM, Carranza PM, Gehrig PM, Roschitzki B, Barkow-Oesterreicher S, Hoelzle K, Riedel K, Kube M, Hoelzle LE. Insights into the gene expression profile of uncultivable hemotrophic Mycoplasma suis during acute infection, obtained using proteome analysis. J Bacteriol.2012 Mar;194(6):1505-14. PMID: 22267506.

  • Pessione A, Lamberti C, Cocolin L, Campolongo S, Grunau A, Giubergia S, Eberl L, Riedel K, Pessione E. Different protein expression profiles in cheese and clinical isolates of Enterococcus faecalis revealed by proteomic analysis. Proteomics.2012 Feb;12(3):431-47. PMID: 22213736.

  • Schneider T, Schmid E, de Castro JV Jr, Cardinale M, Eberl L, Grube M, Berg G, Riedel K. Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics.2011 Jul;11(13):2752-6. PMID: 21604374.

  • Eberl L, Riedel K. Mining quorum sensing regulated proteins – Role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics. Proteomics.2011 Aug;11(15):3070-85. PMID: 21548094.

  • Carranza P, Grunau A, Schneider T, Hartmann I, Lehner A, Stephan R, Gehrig P, Grossmann J, Groebel K, Hoelzle LE, Eberl L, Riedel K. A gel-free quantitative proteomics approach to investigate temperature adaptation of the food-borne pathogen Cronobacter turicensis 3032. Proteomics.2010 Sep;10(18):3248-61. PMID: 20718006.

  • Moretti M, Grunau A, Minerdi D, Gehrig P, Roschitzki B, Eberl L, Garibaldi A, Gullino ML, Riedel K. A proteomics approach to study synergistic and antagonistic interactions of the fungal-bacterial consortium Fusarium oxysporum wild-type MSA 35. Proteomics.2010 Sep;10(18):3292-320. PMID: 20707000.

  • Lumjiaktase P, Aguilar C, Battin T, Riedel K, Eberl L. Construction of self-transmissible green fluorescent protein-based biosensor plasmids and their use for identification of N-acyl homoserine-producing bacteria in lake sediments. Appl Environ Microbiol.2010 Sep;76(18):6119-27. PMID: 20675456.

  • Bosshard F, Riedel K, Schneider T, Geiser C, Bucheli M, Egli T. Protein oxidation and aggregation in UVA-irradiated Escherichia coli cells as signs of accelerated cellular senescence. Environ Microbiol.2010 Nov;12(11):2931-45. PMID: 20545749.

  • Schneider T, Gerrits B, Gassmann R, Schmid E, Gessner MO, Richter A, Battin T, Eberl L, Riedel K. Proteome analysis of fungal and bacterial involvement in leaf litter decomposition. Proteomics.2010 May;10(9):1819-30. PMID: 20198641.

  • Srinivas N, Jetter P, Ueberbacher BJ, Werneburg M, Zerbe K, Steinmann J, Van der Meijden B, Bernardini F, Lederer A, Dias RL, Misson PE, Henze H, Zumbrunn J, Gombert FO, Obrecht D, Hunziker P, Schauer S, Ziegler U, Käch A, Eberl L, Riedel K, DeMarco SJ, Robinson JA. Peptidomimetic antibiotics target outer-membrane biogenesis in Pseudomonas aeruginosa. Science.2010 Feb 19;327(5968):1010-3. PMID: 20167788.

  • Hartmann I, Carranza P, Lehner A, Stephan R, Eberl L, Riedel K. Genes involved in Cronobacter sakazakii biofilm formation. Appl Environ Microbiol.2010 Apr;76(7):2251-61. PMID: 20118366.

  • Schneider T, Riedel K. Environmental proteomics: analysis of structure and function of microbial communities. Proteomics.2010 Feb;10(4):785-98. PMID: 19953545.

  • Schmid M, Iversen C, Gontia I, Stephan R, Hofmann A, Hartmann A, Jha B, Eberl L, Riedel K, Lehner A. Evidence for a plant-associated natural habitat for Cronobacter spp. Res Microbiol.2009 Oct;160(8):608-14. PMID: 19748571.

  • Carranza P, Hartmann I, Lehner A, Stephan R, Gehrig P, Grossmann J, Barkow-Oesterreicher S, Roschitzki B, Eberl L, Riedel K. Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen. Proteomics.2009 Jul;9(13):3564-79. PMID: 19609963.

  • Uehlinger S, Schwager S, Bernier SP, Riedel K, Nguyen DT, Sokol PA, Eberl L. Identification of specific and universal virulence factors in Burkholderia cenocepacia strains by using multiple infection hosts. Infect Immun.2009 Sep;77(9):4102-10. PMID: 19528212.

  • Pessione E, Pessione A, Lamberti C, Coïsson DJ, Riedel K, Mazzoli R, Bonetta S, Eberl L, Giunta C. First evidence of a membrane-bound, tyramine and beta-phenylethylamine producing, tyrosine decarboxylase in Enterococcus faecalis: a two-dimensional electrophoresis proteomic study. Proteomics.2009 May;9(10):2695-710. PMID: 19405032.

  • Schneider T, Schellenberg M, Meyer S, Keller F, Gehrig P, Riedel K, Lee Y, Eberl L, Martinoia E. Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants. Proteomics.2009 May;9(10):2668-77. PMID: 19391183.

  • Müller H, Westendorf C, Leitner E, Chernin L, Riedel K, Schmidt S, Eberl L, Berg G. Quorum-sensing effects in the antagonistic rhizosphere bacterium Serratia plymuthica HRO-C48. FEMS Microbiol Ecol.2009 Mar;67(3):468-78. PMID: 19220861.

  • Bohn YS, Brandes G, Rakhimova E, Horatzek S, Salunkhe P, Munder A, van Barneveld A, Jordan D, Bredenbruch F, Häussler S, Riedel K, Eberl L, Jensen PØ, Bjarnsholt T, Moser C, Hoiby N, Tümmler B, Wiehlmann L. Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection. Mol Microbiol.2009 Feb;71(3):730-47. PMID: 19054330.

  • Tiaden A, Spirig T, Carranza P, Brüggemann H, Riedel K, Eberl L, Buchrieser C, Hilbi H. Synergistic contribution of the Legionella pneumophila lqs genes to pathogen-host interactions. J Bacteriol.2008 Nov;190(22):7532-47. PMID: 18805977.

  • García-Aljaro C, Eberl L, Riedel K, Blanch AR. Detection of quorum-sensing-related molecules in Vibrio scophthalmi. BMC Microbiol.2008 Aug 13;8:138. PMID: 18700048.

  • Grimm M, Stephan R, Iversen C, Manzardo GG, Rattei T, Riedel K, Ruepp A, Frishman D, Lehner A. Cellulose as an extracellular matrix component present in Enterobacter sakazakii biofilms. J Food Prot.2008 Jan;71(1):13-8. PMID: 18236657.

  • Sokol PA, Malott RJ, Riedel K, Eberl L. Communication systems in the genus Burkholderia: global regulators and targets for novel antipathogenic drugs. Future Microbiol.2007 Oct;2(5):555-63. PMID: 17927476.

  • Krick A, Kehraus S, Eberl L, Riedel K, Anke H, Kaesler I, Graeber I, Szewzyk U, König GM. A marine Mesorhizobium sp. produces structurally novel long-chain N-acyl-L-homoserine lactones. Appl Environ Microbiol.2007 Jun;73(11):3587-94. PMID: 17400774.

  • Riedel K, Lehner A. Identification of proteins involved in osmotic stress response in Enterobacter sakazakii by proteomics. Proteomics.2007 Apr;7(8):1217-31. PMID: 17380534.

  • Kay E, Humair B, Dénervaud V, Riedel K, Spahr S, Eberl L, Valverde C, Haas D. Two GacA-dependent small RNAs modulate the quorum-sensing response in Pseudomonas aeruginosa. J Bacteriol.2006 Aug;188(16):6026-33. PMID: 16885472.

  • Lehner A, Riedel K, Rattei T, Ruepp A, Frishman D, Breeuwer P, Diep B, Eberl L, Stephan R. Molecular characterization of the alpha-glucosidase activity in Enterobacter sakazakii reveals the presence of a putative gene cluster for palatinose metabolism. Syst Appl Microbiol.2006 Dec;29(8):609-25. PMID: 16563686.

  • Riedel K, Köthe M, Kramer B, Saeb W, Gotschlich A, Ammendola A, Eberl L. Computer-aided design of agents that inhibit the cep quorum-sensing system of Burkholderia cenocepacia. Antimicrob Agents Chemother.2006 Jan;50(1):318-23. PMID: 16377703.

  • Lehner A, Riedel K, Eberl L, Breeuwer P, Diep B, Stephan R. Biofilm formation, extracellular polysaccharide production, and cell-to-cell signaling in various Enterobacter sakazakii strains: aspects promoting environmental persistence. J Food Prot.2005 Nov;68(11):2287-94. PMID: 16300064.

  • Riedel K, Carranza P, Gehrig P, Potthast F, Eberl L. Towards the proteome of Burkholderia cenocepacia H111: setting up a 2-DE reference map. Proteomics.2006 Jan;6(1):207-16. PMID: 16294309.

  • Arevalo-Ferro C, Reil G, Görg A, Eberl L, Riedel K. Biofilm formation of Pseudomonas putida IsoF: the role of quorum sensing as assessed by proteomics. Syst Appl Microbiol.2005 Mar;28(2):87-114. PMID: 15830802.

  • Huber B, Feldmann F, Köthe M, Vandamme P, Wopperer J, Riedel K, Eberl L. Identification of a novel virulence factor in Burkholderia cenocepacia H111 required for efficient slow killing of Caenorhabditis elegans. Infect Immun.2004 Dec;72(12):7220-30. PMID: 15557647.

  • Rasch M, Buch C, Austin B, Slierendrecht WJ, Ekmann KS, Larsen JL, Johansen C, Riedel K, Eberl L, Givskov M, Gram L. An inhibitor of bacterial quorum sensing reduces mortalities caused by Vibriosis in rainbow trout (Oncorhynchus mykiss, Walbaum). Syst Appl Microbiol.2004 May;27(3):350-9. PMID: 15214641.

  • Arevalo-Ferro C, Buschmann J, Reil G, Görg A, Wiehlmann L, Tümmler B, Eberl L, Riedel K. Proteome analysis of intraclonal diversity of two Pseudomonas aeruginosa TB clone isolates. Proteomics.2004 May;4(5):1241-6. PMID: 15188392.

  • Arevalo-Ferro C, Hentzer M, Reil G, Görg A, Kjelleberg S, Givskov M, Riedel K, Eberl L. Identification of quorum-sensing regulated proteins in the opportunistic pathogen Pseudomonas aeruginosa by proteomics. Environ Microbiol.2003 Dec;5(12):1350-69. PMID: 14641579.

  • Hentzer M, Wu H, Andersen JB, Riedel K, Rasmussen TB, Bagge N, Kumar N, Schembri MA, Song Z, Kristoffersen P, Manefield M, Costerton JW, Molin S, Eberl L, Steinberg P, Kjelleberg S, Høiby N, Givskov M. Attenuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors. EMBO J.2003 Aug 1;22(15):3803-15. PMID: 12881415.

  • Christensen AB, Riedel K, Eberl L, Flodgaard LR, Molin S, Gram L, Givskov M. Quorum-sensing-directed protein expression in Serratia proteamaculans B5a. Microbiology.2003 Feb;149(Pt 2):471-83. PMID: 12624209.

  • Riedel K, Arevalo-Ferro C, Reil G, Görg A, Lottspeich F, Eberl L. Analysis of the quorum-sensing regulon of the opportunistic pathogen Burkholderia cepacia H111 by proteomics. Electrophoresis.2003 Feb;24(4):740-50. PMID: 12601746.

  • Steidle A, Allesen-Holm M, Riedel K, Berg G, Givskov M, Molin S, Eberl L. Identification and characterization of an N-acylhomoserine lactone-dependent quorum-sensing system in Pseudomonas putida strain IsoF. Appl Environ Microbiol.2002 Dec;68(12):6371-82. PMID: 12450862.

  • Huber B, Riedel K, Köthe M, Givskov M, Molin S, Eberl L. Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111. Mol Microbiol.2002 Oct;46(2):411-26. PMID: 12406218.

  • Hentzer M, Riedel K, Rasmussen TB, Heydorn A, Andersen JB, Parsek MR, Rice SA, Eberl L, Molin S, Høiby N, Kjelleberg S, Givskov M. Inhibition of quorum sensing in Pseudomonas aeruginosa biofilm bacteria by a halogenated furanone compound. Microbiology.2002 Jan;148(Pt 1):87-102. PMID: 11782502.

  • Riedel K, Hentzer M, Geisenberger O, Huber B, Steidle A, Wu H, Høiby N, Givskov M, Molin S, Eberl L. N-acylhomoserine-lactone-mediated communication between Pseudomonas aeruginosa and Burkholderia cepacia in mixed biofilms. Microbiology.2001 Dec;147(Pt 12):3249-62. PMID: 11739757.

  • Huber B, Riedel K, Hentzer M, Heydorn A, Gotschlich A, Givskov M, Molin S, Eberl L. The cep quorum-sensing system of Burkholderia cepacia H111 controls biofilm formation and swarming motility. Microbiology.2001 Sep;147(Pt 9):2517-28. PMID: 11535791.

  • Gotschlich A, Huber B, Geisenberger O, Tögl A, Steidle A, Riedel K, Hill P, Tümmler B, Vandamme P, Middleton B, Camara M, Williams P, Hardman A, Eberl L. Synthesis of multiple N-acylhomoserine lactones is wide-spread among the members of the Burkholderia cepacia complex. Syst Appl Microbiol.2001 Apr;24(1):1-14. PMID: 11403388.

  • Riedel K, Ohnesorg T, Krogfelt KA, Hansen TS, Omori K, Givskov M, Eberl L. N-acyl-L-homoserine lactone-mediated regulation of the lip secretion system in Serratia liquefaciens MG1. J Bacteriol.2001 Mar;183(5):1805-9. PMID: 11160117.

  • Geisenberger O, Givskov M, Riedel K, Høiby N, Tümmler B, Eberl L. Production of N-acyl-L-homoserine lactones by P. aeruginosa isolates from chronic lung infections associated with cystic fibrosis. FEMS Microbiol Lett.2000 Mar 15;184(2):273-8. PMID: 10713433.

  • Riedel K, Bronnenmeier K. Active-site mutations which change the substrate specificity of the Clostridium stercorarium cellulase CelZ implications for synergism. Eur J Biochem.1999 May;262(1):218-23. PMID: 10231384.

  • Riedel K, Ritter J, Bauer S, Bronnenmeier K. The modular cellulase CelZ of the thermophilic bacterium Clostridium stercorarium contains a thermostabilizing domain. FEMS Microbiol Lett.1998 Jul 15;164(2):261-7. PMID: 9682475.

  • Riedel K, Bronnenmeier K. Intramolecular synergism in an engineered exo-endo-1,4-beta-glucanase fusion protein. Mol Microbiol.1998 May;28(4):767-75. PMID: 9643544.

  • Zverlov V, Mahr S, Riedel K, Bronnenmeier K. Properties and gene structure of a bifunctional cellulolytic enzyme (CelA) from the extreme thermophile ‘Anaerocellum thermophilum’ with separate glycosyl hydrolase family 9 and 48 catalytic domains. Microbiology.1998 Feb;144 ( Pt 2):457-65. PMID: 9493383.

  • Bronnenmeier K, Kundt K, Riedel K, Schwarz WH, Staudenbauer WL. Structure of the Clostridium stercorarium gene celY encoding the exo-1,4-beta-glucanase Avicelase II. Microbiology.1997 Mar;143 ( Pt 3):891-8. PMID: 9084173.

  • Liebl W, Ruile P, Bronnenmeier K, Riedel K, Lottspeich F, Greif I. Analysis of a Thermotoga maritima DNA fragment encoding two similar thermostable cellulases, CelA and CelB, and characterization of the recombinant enzymes. Microbiology.1996 Sep;142 ( Pt 9):2533-42. PMID: 8828221.